Data files

VectorBase is committed to a new release every two months. A list of changes and the latest data (e.g., current gene sets) relative to a specific release can be found in our release notes. Current and archived data are available for download below (an FAQ provides a summary of the file types).

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Operations
File Organism Size Type Description
Aedes-aegypti-LVP_AGWG_BASEFEATURES_AaegL5.1.gff3.gz Aedes aegypti 5 MB Basefeatures LVP_AGWG strain AaegL5.1 geneset in GFF3 format.
Aedes-aegypti-LVP_AGWG_REPEATFEATURES_AaegL5.gff3.gz Aedes aegypti 107.2 MB Repeat features LVP_AGWG strain AaegL5 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti-Aag2-cell-line_REPEATFEATURES_Aag2.gff3.gz Aedes aegypti 83.78 MB Repeat features Aag2 cell line strain Aag2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-aegypti-Liverpool_REPEATFEATURES_AaegL3.gff3.gz Aedes aegypti 91.05 MB Repeat features Liverpool strain AaegL3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus-C6-36-cell-line_BASEFEATURES_NCBI-101.gff3.gz Aedes albopictus 6.74 MB Basefeatures C6/36 cell line strain NCBI-101 geneset in GFF3 format.
Aedes-albopictus-Foshan_BASEFEATURES_AaloF1.2.gff3.gz Aedes albopictus 5.12 MB Basefeatures Foshan strain AaloF1.2 geneset in GFF3 format.
Aedes-albopictus-C6-36-cell-line_REPEATFEATURES_GCA_001876365.2.gff3.gz Aedes albopictus 122.65 MB Repeat features C6/36 cell line strain GCA_001876365.2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Aedes-albopictus-Foshan_REPEATFEATURES_AaloF1.gff3.gz Aedes albopictus 135.86 MB Repeat features Foshan strain AaloF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-albimanus-STECLA_BASEFEATURES_AalbS2.6.gff3.gz Anopheles albimanus 1.76 MB Basefeatures STECLA strain AalbS2.6 geneset in GFF3 format.
Anopheles-albimanus-STECLA_REPEATFEATURES_AalbS2.gff3.gz Anopheles albimanus 3.2 MB Repeat features STECLA strain AalbS2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-arabiensis-Dongola_BASEFEATURES_AaraD1.9.gff3.gz Anopheles arabiensis 2.08 MB Basefeatures Dongola strain AaraD1.9 geneset in GFF3 format.
Anopheles-arabiensis-Dongola_REPEATFEATURES_AaraD1.gff3.gz Anopheles arabiensis 4.73 MB Repeat features Dongola strain AaraD1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-atroparvus-EBRO_BASEFEATURES_AatrE3.1.gff3.gz Anopheles atroparvus 2.12 MB Basefeatures EBRO strain AatrE3.1 geneset in GFF3 format.
Anopheles-atroparvus-EBRO_REPEATFEATURES_AatrE3.gff3.gz Anopheles atroparvus 3.58 MB Repeat features EBRO strain AatrE3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-christyi-ACHKN1017_BASEFEATURES_AchrA1.7.gff3.gz Anopheles christyi 2.13 MB Basefeatures ACHKN1017 strain AchrA1.7 geneset in GFF3 format.
Anopheles-christyi-ACHKN1017_REPEATFEATURES_AchrA1.gff3.gz Anopheles christyi 3.81 MB Repeat features ACHKN1017 strain AchrA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-coluzzii-Mali-NIH_BASEFEATURES_AcolM1.7.gff3.gz Anopheles coluzzii 2.19 MB Basefeatures Mali-NIH strain AcolM1.7 geneset in GFF3 format.
Anopheles-coluzzii-Mali-NIH_REPEATFEATURES_AcolM1.gff3.gz Anopheles coluzzii 4.77 MB Repeat features Mali-NIH strain AcolM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.6.gff3.gz Anopheles culicifacies A 2.35 MB Basefeatures A-37 strain AculA1.6 geneset in GFF3 format.
Anopheles-culicifacies-A-37_BASEFEATURES_AculA1.5.gff3.gz Anopheles culicifacies A 2.34 MB Basefeatures A-37 strain AculA1.5 geneset in GFF3 format.
Anopheles-culicifacies-A-37_REPEATFEATURES_AculA1.gff3.gz Anopheles culicifacies A 2.87 MB Repeat features A-37 strain AculA1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-darlingi-Coari_BASEFEATURES_AdarC3.8.gff3.gz Anopheles darlingi 1.75 MB Basefeatures Coari strain AdarC3.8 geneset in GFF3 format.
Anopheles-darlingi-Coari_REPEATFEATURES_AdarC3.gff3.gz Anopheles darlingi 2.36 MB Repeat features Coari strain AdarC3 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-dirus-WRAIR2_BASEFEATURES_AdirW1.8.gff3.gz Anopheles dirus 1.88 MB Basefeatures WRAIR2 strain AdirW1.8 geneset in GFF3 format.
Anopheles-dirus-WRAIR2_REPEATFEATURES_AdirW1.gff3.gz Anopheles dirus 3.25 MB Repeat features WRAIR2 strain AdirW1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-epiroticus-Epiroticus2_BASEFEATURES_AepiE1.7.gff3.gz Anopheles epiroticus 1.7 MB Basefeatures Epiroticus2 strain AepiE1.7 geneset in GFF3 format.
Anopheles-epiroticus-Epiroticus2_REPEATFEATURES_AepiE1.gff3.gz Anopheles epiroticus 3.37 MB Repeat features Epiroticus2 strain AepiE1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-farauti-FAR1_BASEFEATURES_AfarF2.5.gff3.gz Anopheles farauti 2.06 MB Basefeatures FAR1 strain AfarF2.5 geneset in GFF3 format.
Anopheles-farauti-FAR1_REPEATFEATURES_AfarF2.gff3.gz Anopheles farauti 3.23 MB Repeat features FAR1 strain AfarF2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_farauti_projected_2015_06.gff3 Anopheles farauti 10.12 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_farauti_unprojected_2015_06.gff3 Anopheles farauti 161.21 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
Anopheles-funestus-FUMOZ_BASEFEATURES_AfunF1.9.gff3.gz Anopheles funestus 1.99 MB Basefeatures FUMOZ strain AfunF1.9 geneset in GFF3 format.
Anopheles-funestus-FUMOZ_REPEATFEATURES_AfunF1.gff3.gz Anopheles funestus 3.36 MB Repeat features FUMOZ strain AfunF1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-PEST_BASEFEATURES_AgamP4.10.gff3.gz Anopheles gambiae 2.49 MB Basefeatures PEST strain AgamP4.10 geneset in GFF3 format.
Anopheles-gambiae-PEST_REPEATFEATURES_AgamP4.gff3.gz Anopheles gambiae 6.1 MB Repeat features PEST strain AgamP4 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-gambiae-Pimperena_REPEATFEATURES_AgamS1.gff3.gz Anopheles gambiae 6.76 MB Repeat features Pimperena strain AgamS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-maculatus-maculatus3_BASEFEATURES_AmacM1.5.gff3.gz Anopheles maculatus 2.75 MB Basefeatures maculatus3 strain AmacM1.5 geneset in GFF3 format.
Anopheles-maculatus-maculatus3_REPEATFEATURES_AmacM1.gff3.gz Anopheles maculatus 2.92 MB Repeat features maculatus3 strain AmacM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-melas-CM1001059_A_BASEFEATURES_AmelC2.6.gff3.gz Anopheles melas 2.44 MB Basefeatures CM1001059_A strain AmelC2.6 geneset in GFF3 format.
Anopheles-melas-CM1001059_A_REPEATFEATURES_AmelC2.gff3.gz Anopheles melas 5.02 MB Repeat features CM1001059_A strain AmelC2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_melas_projected_2015_06.gff3 Anopheles melas 9.95 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_melas_unprojected_2015_06.gff3 Anopheles melas 144.51 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
Anopheles-merus-MAF_BASEFEATURES_AmerM2.8.gff3.gz Anopheles merus 2.07 MB Basefeatures MAF strain AmerM2.8 geneset in GFF3 format.
Anopheles-merus-MAF_REPEATFEATURES_AmerM2.gff3.gz Anopheles merus 5.14 MB Repeat features MAF strain AmerM2 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
anopheles_merus_projected_2015_06.gff3 Anopheles merus 9.63 MB Transcript projection Projected transcripts (coordinates on the new assembly) in GFF3 format.
anopheles_merus_unprojected_2015_06.gff3 Anopheles merus 542.38 KB Transcript projection Unrojected (but partially mapped) transcripts (coordinates on the new assembly) in GFF3 format.
Anopheles-minimus-MINIMUS1_BASEFEATURES_AminM1.8.gff3.gz Anopheles minimus 1.87 MB Basefeatures MINIMUS1 strain AminM1.8 geneset in GFF3 format.
Anopheles-minimus-MINIMUS1_REPEATFEATURES_AminM1.gff3.gz Anopheles minimus 2.75 MB Repeat features MINIMUS1 strain AminM1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.
Anopheles-quadriannulatus-SANGWE_BASEFEATURES_AquaS1.10.gff3.gz Anopheles quadriannulatus 2.02 MB Basefeatures SANGWE strain AquaS1.10 geneset in GFF3 format.
Anopheles-quadriannulatus-SANGWE_REPEATFEATURES_AquaS1.gff3.gz Anopheles quadriannulatus 4.6 MB Repeat features SANGWE strain AquaS1 repeat features (RepeatMasker, Dust, TRF) in GFF3 format.

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